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Medientyp:
Buch
Titel:
Fungal genomics
:
methods and protocols
Enthält:
Introduction : overview of fungal genomics
/ Ronald P. de Vries, Igor V. Grigoriev, and Adrian Tsang
Fungal genomic DNA extraction methods for rapid genotyping and genome sequencing
/ Annie Bellemare, Tricia John, and Sandrine Marqueteau
Purification of fungal high molecular weight genomic DNA from environmental samples
/ Laure Fauchery, Stéphane Uroz, Marc Buée, and Annegret Kohler
Genome sequencing
/ Yuko Yoshinaga, Christopher Daum, Guifen He, and Ronan O'Malley
Methods for genomic characterization and maintenance anaerobic fungi
/ Xuefeng Peng, Candice L. Swift, Michael K. Theodorou, and Michelle A. O'Malley
Efficient extraction method for high quality fungal RNA from complex lignocellulosic substrates
/ Miia R. Mäkelä and Kristiina Hildén
Isolation of high quality RNA for metatranscriptomic analysis of lignocellulose digestion in the rumen
/ R. J. Gruninger, R. J. Forster, and T. A. McAllister
Fungal transcriptomics
/ Vasanth R. Singan, Rita C. Kuo, and Cindy Chen
Mass spectrometry-based proteomics
/ Marcos Rafael Di Falco
Mass spectrometry-based metabolomics
/ Young-Mo Kim and Heino M. Heyman
Genome editing : CRISPR-Cas9
/ Jakob B. Hoof, Christina S. Nødvig, and Uffe H. Mortensen
Evolutionary adaptation togenerate mutants
/ Ronald P. de Vries, Ronnie Lubbers, Aleksandrina Patyshakuliyeva, Ad Wiebenga, and Isabelle Benoit-Gelber
Genome assembly
/ Alicia Clum
Fungal epigenomics : detection and analysis
/ Stephen J. Mondo, Rita C. Kuo, and Vasanth R. Singan
Fungal genome annotation
/ Sajeet Haridas, Asaf Salamov, and Igor V. Grigoriev
Manual gene curation and functional annotation
/ Erin McDonnell, Kimchi Strasser, and Adrian Tsang
Evaluating programs for predicting genes and transcripts with RNA-Seq support in fungal genomes
/ Ian Reid
Genomic sequence variation analysis by resequencing
/ Joel Martin, Wendy Schackwitz, and Anna Lipzen
ChIP-Seq analysis in Neurospora crassa
/ Aileen R. Ferraro and Zachary A. Lewis
Fungal phylogenomics
/ Robert Riley and Laszlo Nagy
Phylogenetic analysis of protein family
/ Letian Song, Sherry Wu, and Adrian Tsang
Parasexual crossings for bulk segregant analysis in Aspergillus niger to facilitate mutant identification via whole genome sequencing
/ Mark Arentshorst and Arthur F. J. Ram.